5SCRIPTS: cyanatable - CYANA shell script

Synopsis: cyanatable [option] [prefix] [logfile]

The 'cyanatable' shell script produces a summary table of a combined
automated NOESY assignment and structure calculation run executed with
the 'noeassign' macro. Statistics on the NOESY peak assignments, the
upper distance bounds, and the structure calculation are extracted from
output files produced by 'noeassign' and arranged in a table with one
column for each cycle of combined automated NOESY assignment and
structure calculation. The standard output from the 'noeassign' run must
have been collected in a log file called AUTO.out, CANDID.out, CALC.out,
<prefix>.out, or <logfile>.

If present, the given <prefix> is prepended to all other input file
names. If, for instance, <prefix> is 'run1', then the 'cyanatable'
script will look for files named 'run1cycle1.noa', 'run1cycle1.ovw' etc.
instead of the files with default file names 'cycle1.noa', 'cycle1.ovw'
etc.

This command can be invoked from the Unix shell or from within CYANA.
The command syntax follows Unix (not INCLAN) conventions.

Options:

  -h    help
  -l    long, more detailed output
  -p    report percentages instead of absolute values

See also: noeassign
