1INCLAN: alias - define or list aliases for commands|../inclan/alias
1INCLAN: ask - ask for interactive input from within a macro|../inclan/ask
1INCLAN: break, exit, quit, return - exit from loops, macros, and from the program|../inclan/break
1INCLAN: break, exit, quit, return - exit from loops, macros, and from the program|../inclan/exit
1INCLAN: break, exit, quit, return - exit from loops, macros, and from the program|../inclan/quit
1INCLAN: break, exit, quit, return - exit from loops, macros, and from the program|../inclan/return
1INCLAN: do - unconditional or Fortran-77 do-loops|../inclan/do
1INCLAN: echo - variable to control the echoing of commands|../inclan/echo
1INCLAN: erract - variable for error handling|../inclan/erract
1INCLAN: eval, show, set, unset, external - set, show and unset variables|../inclan/eval
1INCLAN: eval, show, set, unset, external - set, show and unset variables|../inclan/external
1INCLAN: eval, show, set, unset, external - set, show and unset variables|../inclan/set
1INCLAN: eval, show, set, unset, external - set, show and unset variables|../inclan/show
1INCLAN: eval, show, set, unset, external - set, show and unset variables|../inclan/unset
1INCLAN: goto, go to - jump to a label within a macro|../inclan/goto
1INCLAN: if - Fortran-77 logical or block if statement|../inclan/if
1INCLAN: info - variable to control the amount of information|../inclan/info
1INCLAN: intrinsics - Inclan intrinsic functions|../inclan/intrinsics
1INCLAN: label - labels used in macros in conjunction with goto statements|../inclan/label
1INCLAN: nparam - variable for the number of command line parameters|../inclan/nparam
1INCLAN: nproc - variable for the number of processors|../inclan/nproc
1INCLAN: parameter - give names to command line parameters for macros|../inclan/parameter
1INCLAN: path - variable for the search path for macros|../inclan/path
1INCLAN: print, error - print messages|../inclan/error
1INCLAN: print, error - print messages|../inclan/print
1INCLAN: prompt - variable for the program prompt|../inclan/prompt
1INCLAN: protocol - variable for the protocol file name|../inclan/protocol
1INCLAN: readline - read lines from a file|../inclan/readline
1INCLAN: remove - remove files|../inclan/remove
1INCLAN: sleep - wait a given time|../inclan/sleep
1INCLAN: special characters - $ % { } ( ) ; : \ " ' # @ ! ^|../inclan/special_characters
1INCLAN: subroutine, command - define subroutines or new commands within macros|../inclan/command
1INCLAN: subroutine, command - define subroutines or new commands within macros|../inclan/subroutine
1INCLAN: syntax - analyze parameters of a macro|../inclan/syntax
1INCLAN: system - execute a shell command|../inclan/system
1INCLAN: timing - variable to control the reporting of CPU times|../inclan/timing
1INCLAN: type - copy a macro to standard output|../inclan/type
1INCLAN: var - declare local variables|../inclan/var
2PLOT: plot arc - draw an arc|../inclan/plot_arc
2PLOT: plot caro, plot cross, plot dot, plot plus, plot square, plot triangle - draw markers|../inclan/plot_caro
2PLOT: plot caro, plot cross, plot dot, plot plus, plot square, plot triangle - draw markers|../inclan/plot_cross
2PLOT: plot caro, plot cross, plot dot, plot plus, plot square, plot triangle - draw markers|../inclan/plot_dot
2PLOT: plot caro, plot cross, plot dot, plot plus, plot square, plot triangle - draw markers|../inclan/plot_plus
2PLOT: plot caro, plot cross, plot dot, plot plus, plot square, plot triangle - draw markers|../inclan/plot_square
2PLOT: plot caro, plot cross, plot dot, plot plus, plot square, plot triangle - draw markers|../inclan/plot_triangle
2PLOT: plot clip - set a clip path|../inclan/plot_clip
2PLOT: plot close - close a plot file|../inclan/plot_close
2PLOT: plot comment - write a comment into the plot file|../inclan/plot_comment
2PLOT: plot curve - draw a Bezier spline curve|../inclan/plot_curve
2PLOT: plot errorbar - draw errorbars|../inclan/plot_errorbar
2PLOT: plot file - read a plot file and execute subcommands therein|../inclan/plot_file
2PLOT: plot fit - perform a linear least-squares fit|../inclan/plot_fit
2PLOT: plot frame - draw a frame|../inclan/plot_frame
2PLOT: plot function - plot a function|../inclan/plot_function
2PLOT: plot label - label a plot axis|../inclan/plot_label
2PLOT: plot line - draw straight lines|../inclan/plot_line
2PLOT: plot mif, plot ps - open output plot files|../inclan/plot_mif
2PLOT: plot mif, plot ps - open output plot files|../inclan/plot_ps
2PLOT: plot polygon - draw polygons|../inclan/plot_polygon
2PLOT: plot rectangle - draw a rectangle|../inclan/plot_rectangle
2PLOT: plot scale - scale a plot axis|../inclan/plot_scale
2PLOT: plot set - set plot parameters|../inclan/plot_set
2PLOT: plot shape - draw a shape enclosed by a Bezier spline curve|../inclan/plot_shape
2PLOT: plot spline - draw cubic spline curves|../inclan/plot_longspline
2PLOT: plot spline - draw cubic spline curves|../inclan/plot_spline
2PLOT: plot text - write text into a plot|../inclan/plot_text
2PLOT: plot write - write text into the plot file|../inclan/plot_write
5SCRIPTS: cyana - CYANA shell script|cyana
5SCRIPTS: cyanaclean - CYANA shell script|cyanaclean
5SCRIPTS: cyanafilter - CYANA shell script|cyanafilter
5SCRIPTS: cyanatable - CYANA shell script|cyanatable
6CYANA: angles count - CYANA command|angles_count
6CYANA: angles delete - CYANA command|angles_delete
6CYANA: angles flip - CYANA command|angles_flip
6CYANA: angles ramachandran - CYANA command|angles_ramachandran
6CYANA: angles select - CYANA command|angles_select
6CYANA: angles set - CYANA command|angles_set
6CYANA: angles split - CYANA command|angles_split
6CYANA: angstat clear - CYANA command|angstat_clear
6CYANA: angstat list - CYANA command|angstat_list
6CYANA: angstat make - CYANA command|angstat_make
6CYANA: assign - CYANA command|assign
6CYANA: atoms attach - CYANA command|atoms_attach
6CYANA: atoms calibrate - CYANA command|atoms_calibrate
6CYANA: atoms count - CYANA command|atoms_count
6CYANA: atoms glomsa - CYANA command|atoms_glomsa
6CYANA: atoms list - CYANA command|atoms_list
6CYANA: atoms observable - CYANA command|atoms_observable
6CYANA: atoms select - CYANA command|atoms_select
6CYANA: atoms set - CYANA command|atoms_set
6CYANA: atoms stereo - CYANA command|atoms_stereo
6CYANA: atoms swap - CYANA command|atoms_swap
6CYANA: calibrate - CYANA command|calibrate
6CYANA: couplings count - CYANA command|couplings_count
6CYANA: couplings delete - CYANA command|couplings_delete
6CYANA: couplings make - CYANA command|couplings_make
6CYANA: couplings select - CYANA command|couplings_select
6CYANA: couplings set - CYANA command|couplings_set
6CYANA: distances calculate - CYANA command|distances_calculate
6CYANA: distances check - CYANA command|distances_check
6CYANA: distances combine - CYANA command|distances_combine
6CYANA: distances compare - CYANA command|distances_compare
6CYANA: distances correct - CYANA command|distances_correct
6CYANA: distances count - CYANA command|distances_count
6CYANA: distances delete - CYANA command|distances_delete
6CYANA: distances expand - CYANA command|distances_expand
6CYANA: distances falsify - CYANA command|distances_falsify
6CYANA: distances hbond - CYANA command|distances_hbond
6CYANA: distances information - CYANA command|distances_information
6CYANA: distances make - CYANA command|distances_make
6CYANA: distances modify - CYANA command|distances_modify
6CYANA: distances multiple - CYANA command|distances_multiple
6CYANA: distances select - CYANA command|distances_select
6CYANA: distances set - CYANA command|distances_set
6CYANA: distances short - CYANA command|distances_short
6CYANA: distances sort - CYANA command|distances_sort
6CYANA: distances split - CYANA command|distances_split
6CYANA: distances stat - CYANA command|distances_stat
6CYANA: distances stereoexpand - CYANA command|distances_stereoexpand
6CYANA: distances unique - CYANA command|distances_unique
6CYANA: distances vdw - CYANA command|distances_vdw
6CYANA: gradient - CYANA command|gradient
6CYANA: grid aco - CYANA command|grid_aco
6CYANA: grid correlate - CYANA command|grid_correlate
6CYANA: grid fragment - CYANA command|grid_fragment
6CYANA: grid memory - CYANA command|grid_memory
6CYANA: grid search - CYANA command|grid_search
6CYANA: grid swap - CYANA command|grid_swap
6CYANA: library check - CYANA command|library_check
6CYANA: library mirror - CYANA command|library_mirror
6CYANA: library new - CYANA command|library_new
6CYANA: library remove - CYANA command|library_remove
6CYANA: library rename - CYANA command|library_rename
6CYANA: library replace - CYANA command|library_replace
6CYANA: md - CYANA command|md
6CYANA: minimize - CYANA command|minimize
6CYANA: molecules define - CYANA command|molecules_define
6CYANA: molecules identity - CYANA command|molecules_identity
6CYANA: molecules symdist - CYANA command|molecules_symdist
6CYANA: pcs axial - CYANA command|pcs_axial
6CYANA: pcs count - CYANA command|pcs_count
6CYANA: pcs delete - CYANA command|pcs_delete
6CYANA: pcs list - CYANA command|pcs_list
6CYANA: pcs make - CYANA command|pcs_make
6CYANA: pcs rhombic - CYANA command|pcs_rhombic
6CYANA: pcs select - CYANA command|pcs_select
6CYANA: pcs set - CYANA command|pcs_set
6CYANA: peaks backcal - CYANA command|peaks_backcal
6CYANA: peaks calibrate - CYANA command|peaks_calibrate
6CYANA: peaks count - CYANA command|peaks_count
6CYANA: peaks create - CYANA command|peaks_create
6CYANA: peaks delete - CYANA command|peaks_delete
6CYANA: peaks deviations - CYANA command|peaks_deviations
6CYANA: peaks distance - CYANA command|peaks_distance
6CYANA: peaks filter - CYANA command|peaks_filter
6CYANA: peaks fit - CYANA command|peaks_fit
6CYANA: peaks protonize - CYANA command|peaks_protonize
6CYANA: peaks select - CYANA command|peaks_select
6CYANA: peaks set - CYANA command|peaks_set
6CYANA: peaks simplecal - CYANA command|peaks_simplecal
6CYANA: peaks sort - CYANA command|peaks_sort
6CYANA: peaks split - CYANA command|peaks_split
6CYANA: peaks unassign - CYANA command|peaks_unassign
6CYANA: peaks unique - CYANA command|peaks_unique
6CYANA: randomize - CYANA command|randomize
6CYANA: rdc count - CYANA command|rdc_count
6CYANA: rdc delete - CYANA command|rdc_delete
6CYANA: rdc distance - CYANA command|rdc_distance
6CYANA: rdc fittensor - CYANA command|rdc_fittensor
6CYANA: rdc list - CYANA command|rdc_list
6CYANA: rdc make - CYANA command|rdc_make
6CYANA: rdc select - CYANA command|rdc_select
6CYANA: rdc set - CYANA command|rdc_set
6CYANA: rdc tensor - CYANA command|rdc_tensor
6CYANA: read aco - CYANA command|read_aco
6CYANA: read ang - CYANA command|read_ang
6CYANA: read bmrb - CYANA command|read_bmrb
6CYANA: read cco - CYANA command|read_cco
6CYANA: read cor - CYANA command|read_cor
6CYANA: read lib - CYANA command|read_lib
6CYANA: read lol - CYANA command|read_lol
6CYANA: read nmrview - CYANA command|read_nmrview
6CYANA: read pcs - CYANA command|read_pcs
6CYANA: read pdb - CYANA command|read_pdb
6CYANA: read peaks - CYANA command|read_peaks
6CYANA: read prot - CYANA command|read_prot
6CYANA: read rdc - CYANA command|read_rdc
6CYANA: read spectrum - CYANA command|read_spectrum
6CYANA: read upl - CYANA command|read_upl
6CYANA: read xpk - CYANA command|read_xpk
6CYANA: read xplor - CYANA command|read_xplor
6CYANA: shifts adapt - CYANA command|shifts_adapt
6CYANA: shifts assign - CYANA command|shifts_assign
6CYANA: shifts check - CYANA command|shifts_check
6CYANA: shifts collapse - CYANA command|shifts_collapse
6CYANA: shifts consolidate - CYANA command|shifts_consolidate
6CYANA: shifts converge - CYANA command|shifts_converge
6CYANA: shifts d2o - CYANA command|shifts_d2o
6CYANA: shifts incomplete - CYANA command|shifts_incomplete
6CYANA: shifts initialize - CYANA command|shifts_initialize
6CYANA: shifts missing - CYANA command|shifts_missing
6CYANA: shifts offset - CYANA command|shifts_offset
6CYANA: shifts randomcoil - CYANA command|shifts_randomcoil
6CYANA: shifts renumber - CYANA command|shifts_renumber
6CYANA: shifts unusual - CYANA command|shifts_unusual
6CYANA: spec noise  - CYANA command|spectrum_noise
6CYANA: spec pick contour - CYANA command|spectrum_pick_contour
6CYANA: spec pick contour - CYANA command|spectrum_pick_filter
6CYANA: structures clear - CYANA command|structures_clear
6CYANA: structures clear_spectra - CYANA command|structures_clear_spectra
6CYANA: structures copy - CYANA command|structures_copy
6CYANA: structures hbonds - CYANA command|structures_hbonds
6CYANA: structures insert - CYANA command|structures_insert
6CYANA: structures list - CYANA command|structures_list
6CYANA: structures mean - CYANA command|structures_mean
6CYANA: structures overlay - CYANA command|structures_overlay
6CYANA: structures remove_int - CYANA command|structures_remove_int
6CYANA: structures secondary - CYANA command|structures_secondary
6CYANA: structures select - CYANA command|structures_select
6CYANA: structures sort - CYANA command|structures_sort
6CYANA: structures swap - CYANA command|structures_swap
6CYANA: structures val_complete - CYANA command|structures_val_complete
6CYANA: structures validate - CYANA command|structures_validate
6CYANA: structures violate - CYANA command|structures_violate
6CYANA: write aco - CYANA command|write_aco
6CYANA: write ang - CYANA command|write_ang
6CYANA: write assign - CYANA command|write_assign
6CYANA: write bmrb - CYANA command|write_bmrb
6CYANA: write cco - CYANA command|write_cco
6CYANA: write cor - CYANA command|write_cor
6CYANA: write lib - CYANA command|write_lib
6CYANA: write lol - CYANA command|write_lol
6CYANA: write pcs - CYANA command|write_pcs
6CYANA: write pdb - CYANA command|write_pdb
6CYANA: write peaks - CYANA command|write_peaks
6CYANA: write prot - CYANA command|write_prot
6CYANA: write rdc - CYANA command|write_rdc
6CYANA: write seq - CYANA command|write_seq
6CYANA: write sparky - CYANA command|write_sparky
6CYANA: write spectrum - CYANA command|write_spectrum
6CYANA: write upl - CYANA command|write_upl
6CYANA: write xpk - CYANA command|write_xpk
7MACROS: analyze_peakmatch - CYANA macro|../../macro/analyze_peakmatch.cya
7MACROS: anneal - CYANA macro|../../macro/anneal.cya
7MACROS: atomseqplot - CYANA macro|../../macro/atomseqplot.cya
7MACROS: calc_all - CYANA macro|../../macro/calc_all.cya
7MACROS: caliba - CYANA macro|../../macro/caliba.cya
7MACROS: calibration - CYANA macro|../../macro/calibration.cya
7MACROS: cashiftaco - CYANA macro|../../macro/cashiftaco.cya
7MACROS: cashiftplot - CYANA macro|../../macro/cashiftplot.cya
7MACROS: cisprocheck - CYANA macro|../../macro/cisprocheck.cya
7MACROS: coco - CYANA macro|../../macro/coco.cya
7MACROS: consolidate - CYANA macro|../../macro/consolidate.cya
7MACROS: crossvalidate - CYANA macro|../../macro/crossvalidate.cya
7MACROS: cyclicbond - CYANA macro|../../macro/cyclicbond.cya
7MACROS: cyscheck - CYANA macro|../../macro/cyscheck.cya
7MACROS: dcostat - CYANA macro|../../macro/dcostat.cya
7MACROS: dcotab - CYANA macro|../../macro/dcotab.cya
7MACROS: deposit - CYANA macro|../../macro/deposit.cya
7MACROS: dinucleotide - CYANA macro|../../macro/dinucleotide.cya
7MACROS: exppeaks - CYANA macro|../../macro/exppeaks.cya
7MACROS: flip - CYANA macro|../../macro/flip.cya
7MACROS: flya - CYANA macro|../../macro/flya.cya
7MACROS: forall - CYANA macro|../../macro/forall.cya
7MACROS: forallfiles - CYANA macro|../../macro/forallfiles.cya
7MACROS: getsequence - CYANA macro|../../macro/getsequence.cya
7MACROS: graf - CYANA macro|../../macro/graf.cya
7MACROS: gridplot - CYANA macro|../../macro/gridplot.cya
7MACROS: habas - CYANA macro|../../macro/habas.cya
7MACROS: hbond - CYANA macro|../../macro/hbond.cya
7MACROS: info - CYANA macro|../../macro/info.cya
7MACROS: infotab - CYANA macro|../../macro/infotab.cya
7MACROS: init - CYANA macro|../../macro/init.cya
7MACROS: initsafe - CYANA macro|../../macro/initsafe.cya
7MACROS: karplus - CYANA macro|../../macro/karplus.cya
7MACROS: kringle - CYANA macro|../../macro/kringle.cya
7MACROS: longrangeplot - CYANA macro|../../macro/longrangeplot.cya
7MACROS: loop - CYANA macro|../../macro/loop.cya
7MACROS: makeaco - CYANA macro|../../macro/makeaco.cya
7MACROS: multnoeassign - CYANA macro|../../macro/multnoeassign.cya
7MACROS: noeassign - CYANA macro|../../macro/noeassign.cya
7MACROS: onelettercode - CYANA macro|../../macro/onelettercode.cya
7MACROS: opalprefine - CYANA macro|../../macro/opalprefine.cya
7MACROS: overlay - CYANA macro|../../macro/overlay.cya
7MACROS: overview - CYANA macro|../../macro/overview.cya
7MACROS: pales - CYANA macro|../../macro/pales.cya
7MACROS: palesrdc - CYANA macro|../../macro/palesrdc.cya
7MACROS: peakcheck - CYANA macro|../../macro/peakcheck.cya
7MACROS: peakmatch - CYANA macro|../../macro/peakmatch.cya
7MACROS: peaks2dplot - CYANA macro|../../macro/peaks2dplot.cya
7MACROS: plotexpected - CYANA macro|../../macro/plotexpected.cya
7MACROS: prolinebond - CYANA macro|../../macro/prolinebond.cya
7MACROS: pshiftaco - CYANA macro|../../macro/pshiftaco.cya
7MACROS: ramaaco - CYANA macro|../../macro/ramaaco.cya
7MACROS: ramaplot - CYANA macro|../../macro/ramaplot.cya
7MACROS: random_all - CYANA macro|../../macro/random_all.cya
7MACROS: rdcscale - CYANA macro|../../macro/rdcscale.cya
7MACROS: read_all - CYANA macro|../../macro/read_all.cya
7MACROS: readdata - CYANA macro|../../macro/readdata.cya
7MACROS: redac - CYANA macro|../../macro/redac.cya
7MACROS: regularize - CYANA macro|../../macro/regularize.cya
7MACROS: renumber - CYANA macro|../../macro/renumber.cya
7MACROS: rmsd - CYANA macro|../../macro/rmsd.cya
7MACROS: rotameraco - CYANA macro|../../macro/rotameraco.cya
7MACROS: saveselect - CYANA macro|../../macro/saveselect.cya
7MACROS: savestereo - CYANA macro|../../macro/savestereo.cya
7MACROS: seqplot - CYANA macro|../../macro/seqplot.cya
7MACROS: shiftseqplot - CYANA macro|../../macro/shiftseqplot.cya
7MACROS: shifttable - CYANA macro|../../macro/shifttable.cya
7MACROS: shiftx2 - CYANA macro|../../macro/shiftx2.cya
7MACROS: ssbond - CYANA macro|../../macro/ssbond.cya
7MACROS: stereoassign - CYANA macro|../../macro/stereoassign.cya
7MACROS: structcalc - CYANA macro|../../macro/structcalc.cya
7MACROS: structcalc - CYANA macro|../../macro/structcalcfra.cya
7MACROS: sugarbond - CYANA macro|../../macro/sugarbond.cya
7MACROS: sugarpucker - CYANA macro|../../macro/sugarpucker.cya
7MACROS: sugarring - CYANA macro|../../macro/sugarring.cya
7MACROS: syscheck - CYANA macro|../../macro/syscheck.cya
7MACROS: talos - CYANA macro|../../macro/talos.cya
7MACROS: talosaco - CYANA macro|../../macro/talosaco.cya
7MACROS: taloslist - CYANA macro|../../macro/taloslist.cya
7MACROS: tfplot - CYANA macro|../../macro/tfplot.cya
7MACROS: translate - CYANA macro|../../macro/translate.cya
7MACROS: vtfmin - CYANA macro|../../macro/vtfmin.cya
7MACROS: write_all - CYANA macro|../../macro/write_all.cya
8FUNCTIONS: acoviol - CYANA function|acoviol
8FUNCTIONS: anam - CYANA function|anam
8FUNCTIONS: anamlib - CYANA function|anamlib
8FUNCTIONS: anamo - CYANA function|anamo
8FUNCTIONS: angle - CYANA function|angle
8FUNCTIONS: anglelong - CYANA function|anglelong
8FUNCTIONS: asel - CYANA function|asel
8FUNCTIONS: atom - CYANA function|atom
8FUNCTIONS: atomlong - CYANA function|atomlong
8FUNCTIONS: bondangle - CYANA function|bondangle
8FUNCTIONS: calconst - CYANA function|calconst
8FUNCTIONS: calscale - CYANA function|calscale
8FUNCTIONS: cco - CYANA function|cco
8FUNCTIONS: coord - CYANA function|coord
8FUNCTIONS: cstab - CYANA function|cstab
8FUNCTIONS: cyanadir - CYANA function|cyanadir
8FUNCTIONS: dcosel - CYANA function|dcosel
8FUNCTIONS: derms - CYANA function|derms
8FUNCTIONS: diastereotopic - CYANA function|diastereotopic
8FUNCTIONS: dist - CYANA function|dist
8FUNCTIONS: dmax - CYANA function|dmax
8FUNCTIONS: dmean - CYANA function|dmean
8FUNCTIONS: dnam - CYANA function|dnam
8FUNCTIONS: dnamlib - CYANA function|dnamlib
8FUNCTIONS: drms - CYANA function|drms
8FUNCTIONS: dsel - CYANA function|dsel
8FUNCTIONS: dshift - CYANA function|dshift
8FUNCTIONS: dstddev - CYANA function|dstddev
8FUNCTIONS: dval - CYANA function|dval
8FUNCTIONS: ekin - CYANA function|ekin
8FUNCTIONS: ekmean - CYANA function|ekmean
8FUNCTIONS: ekrms - CYANA function|ekrms
8FUNCTIONS: element - CYANA function|element
8FUNCTIONS: emean - CYANA function|emean
8FUNCTIONS: erms - CYANA function|erms
8FUNCTIONS: functions - alphabetical list of all CYANA functions|functions
8FUNCTIONS: heavyatom - CYANA function|heavyatom
8FUNCTIONS: iacod - CYANA function|iacod
8FUNCTIONS: iar - CYANA function|iar
8FUNCTIONS: iaunit - CYANA function|iaunit
8FUNCTIONS: ibond - CYANA function|ibond
8FUNCTIONS: iccoa - CYANA function|iccoa
8FUNCTIONS: ida - CYANA function|ida
8FUNCTIONS: idcoa - CYANA function|idcoa
8FUNCTIONS: idord - CYANA function|idord
8FUNCTIONS: idr - CYANA function|idr
8FUNCTIONS: ifira - CYANA function|ifira
8FUNCTIONS: ifird - CYANA function|ifird
8FUNCTIONS: indco - CYANA function|indco
8FUNCTIONS: inpk - CYANA function|inpk
8FUNCTIONS: interval - CYANA function|interval
8FUNCTIONS: intervals - CYANA function|intervals
8FUNCTIONS: ipa - CYANA function|ipa
8FUNCTIONS: ipel - CYANA function|ipel
8FUNCTIONS: iprev - CYANA function|iprev
8FUNCTIONS: irnum - CYANA function|irnum
8FUNCTIONS: istruct - CYANA function|istruct
8FUNCTIONS: lda - CYANA function|lda
8FUNCTIONS: libdir - CYANA function|libdir
8FUNCTIONS: magnitude - CYANA function|magnitude
8FUNCTIONS: matchangle - CYANA function|matchangle
8FUNCTIONS: matchatom - CYANA function|matchatom
8FUNCTIONS: na - CYANA function|na
8FUNCTIONS: naa - CYANA function|naa
8FUNCTIONS: naco - CYANA function|naco
8FUNCTIONS: narmsd - CYANA function|narmsd
8FUNCTIONS: nassign - CYANA function|nassign
8FUNCTIONS: nbond - CYANA function|nbond
8FUNCTIONS: ncco - CYANA function|ncco
8FUNCTIONS: nconf - CYANA function|nconf
8FUNCTIONS: nd - CYANA function|nd
8FUNCTIONS: ndcdis - CYANA function|ndcdis
8FUNCTIONS: ndco - CYANA function|ndco
8FUNCTIONS: ndcres - CYANA function|ndcres
8FUNCTIONS: ndfree - CYANA function|ndfree
8FUNCTIONS: ndim - CYANA function|ndim
8FUNCTIONS: nlevel - CYANA function|nlevel
8FUNCTIONS: nlol - CYANA function|nlol
8FUNCTIONS: nmol - CYANA function|nmol
8FUNCTIONS: npcs - CYANA function|npcs
8FUNCTIONS: npeaks - CYANA function|npeaks
8FUNCTIONS: npkl - CYANA function|npkl
8FUNCTIONS: nr - CYANA function|nr
8FUNCTIONS: nrdc - CYANA function|nrdc
8FUNCTIONS: nsel - CYANA function|nsel
8FUNCTIONS: nseldis - CYANA function|nseldis
8FUNCTIONS: nshifts - CYANA function|nshifts
8FUNCTIONS: nstruct - CYANA function|nstruct
8FUNCTIONS: nstructall - CYANA function|nstructall
8FUNCTIONS: numpro - CYANA function|numpro
8FUNCTIONS: nupl - CYANA function|nupl
8FUNCTIONS: orientations - CYANA function|orientations
8FUNCTIONS: pi - CYANA function|pi
8FUNCTIONS: psel - CYANA function|psel
8FUNCTIONS: pseudoatom - CYANA function|pseudoatom
8FUNCTIONS: rad - CYANA function|rad
8FUNCTIONS: rhombicity - CYANA function|rhombicity
8FUNCTIONS: rid - CYANA function|rid
8FUNCTIONS: rmsdcurr - CYANA function|rmsdcurr
8FUNCTIONS: rmsdmax - CYANA function|rmsdmax
8FUNCTIONS: rmsdmean - CYANA function|rmsdmean
8FUNCTIONS: rmsdmin - CYANA function|rmsdmin
8FUNCTIONS: rmsdpair - CYANA function|rmsdpair
8FUNCTIONS: rmsdstd - CYANA function|rmsdstd
8FUNCTIONS: rnam - CYANA function|rnam
8FUNCTIONS: rnamlib - CYANA function|rnamlib
8FUNCTIONS: rnum - CYANA function|rnum
8FUNCTIONS: seldis - CYANA function|seldis
8FUNCTIONS: selected - CYANA function|selected
8FUNCTIONS: selrange - CYANA function|selrange
8FUNCTIONS: selrangeshort - CYANA function|selrangeshort
8FUNCTIONS: shift - CYANA function|shift
8FUNCTIONS: stereopartner - CYANA function|stereopartner
8FUNCTIONS: tf - CYANA function|tf
8FUNCTIONS: tfcalc - CYANA function|tfcalc
8FUNCTIONS: tfmax - CYANA function|tfmax
8FUNCTIONS: tfmin - CYANA function|tfmin
8FUNCTIONS: tfres - CYANA function|tfres
8FUNCTIONS: timestep - CYANA function|timestep
8FUNCTIONS: tolcco - CYANA function|tolcco
8FUNCTIONS: tor - CYANA function|tor
9VARIABLES: aco_type - CYANA variable|aco_type
9VARIABLES: corr14 - CYANA variable|corr14
9VARIABLES: cut_aco - CYANA variable|cut_aco
9VARIABLES: cut_cco - CYANA variable|cut_cco
9VARIABLES: cut_lol - CYANA variable|cut_lol
9VARIABLES: cut_pcs - CYANA variable|cut_pcs
9VARIABLES: cut_rdc - CYANA variable|cut_rdc
9VARIABLES: cut_tflocal - CYANA variable|cut_tflocal
9VARIABLES: cut_upl - CYANA variable|cut_upl
9VARIABLES: cut_vdw - CYANA variable|cut_vdw
9VARIABLES: expand - CYANA variable|expand
9VARIABLES: gridpoints - CYANA variable|gridpoints
9VARIABLES: gridtime - CYANA variable|gridtime
9VARIABLES: hb_ang - CYANA variable|hb_ang
9VARIABLES: hb_len - CYANA variable|hb_len
9VARIABLES: level - CYANA variable|level
9VARIABLES: nstep - CYANA variable|nstep
9VARIABLES: pcs_end_k1 - CYANA variable|pcs_end_k1
9VARIABLES: pcs_start_k1 - CYANA variable|pcs_start_k1
9VARIABLES: pcs_ws_on - CYANA variable|pcs_ws_on
9VARIABLES: positive_gyros - CYANA variable|positive_gyros
9VARIABLES: pseudo - CYANA variable|pseudo
9VARIABLES: rdc_potential - CYANA variable|rdc_potential
9VARIABLES: seed - CYANA variable|seed
9VARIABLES: soft_aco - CYANA variable|soft_aco
9VARIABLES: soft_cco - CYANA variable|soft_cco
9VARIABLES: soft_lol - CYANA variable|soft_lol
9VARIABLES: soft_upl - CYANA variable|soft_upl
9VARIABLES: soft_vdw - CYANA variable|soft_vdw
9VARIABLES: swap - CYANA variable|swap
9VARIABLES: tf_asymptote - CYANA variable|tf_asymptote
9VARIABLES: tf_offset - CYANA variable|tf_offset
9VARIABLES: tf_type - CYANA variable|tf_type
9VARIABLES: tolerance - CYANA variable|tolerance
9VARIABLES: tolpeak - CYANA variable|tolpeak
9VARIABLES: upl_values - CYANA variable|upl_values
9VARIABLES: use_svd - CYANA variable|use_svd
9VARIABLES: variables - alphabetical list of all CYANA variables|variables
9VARIABLES: vdw_power - CYANA variable|vdw_power
9VARIABLES: viocap - CYANA variable|viocap
9VARIABLES: weight_aco - CYANA variable|weight_aco
9VARIABLES: weight_cco - CYANA variable|weight_cco
9VARIABLES: weight_ide - CYANA variable|weight_ide
9VARIABLES: weight_lol - CYANA variable|weight_lol
9VARIABLES: weight_pcs - CYANA variable|weight_pcs
9VARIABLES: weight_rdc - CYANA variable|weight_rdc
9VARIABLES: weight_sym - CYANA variable|weight_sym
9VARIABLES: weight_upl - CYANA variable|weight_upl
9VARIABLES: weight_vdw - CYANA variable|weight_vdw
