CYANA Command: enoe restraint: Difference between revisions
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== Description ==  | == Description ==  | ||
This command converts the experimental distances to restraints for structure calculation by applying tolerances where required and performing pseudo atom expansion in line with '''expand=1''', see  | This command converts the experimental distances to restraints for structure calculation by applying tolerances where required and performing pseudo atom expansion in line with '''expand=1''', see * [[CYANA Variable: expand|expand]].  | ||
The parameter '''b0field''' is the field strength [MHz].    | The parameter '''b0field''' is the field strength [MHz].    | ||
Revision as of 12:35, 21 January 2019
Parameters
- b0field =real
 - (required)
 - tauc =real
 - (required)
 - errStereoFlag =integer
 - (default: 1)
 - errStereo =real
 - (default: -1)
 - errUni =real
 - (default: 20)
 - errMeth =real
 - (default: 8.5)
 - errMethyleneQ =real
 - (default: 5)
 - errAro =real
 - (default: 11)
 - chiN =real
 - (default: -1)
 - chiNc =real
 - (default: -1)
 
Description
This command converts the experimental distances to restraints for structure calculation by applying tolerances where required and performing pseudo atom expansion in line with expand=1, see * expand.
The parameter b0field is the field strength [MHz]. The parameter tauc is the overall correlation time [ns]. The parameter errStereoFlag is set to change the default treatment of non-stereo specifically assigned restraints. errStereoFlag=1 is the default, errStereoFlag=0 turns this feature off. The parameter errStereo is set to override the automatically calculated values based on the difference in spin diffusion (errStereo=-1 , default) for non-stereo specifically assigned restraints, it may be set a user specific percentage. The parameter errUni is set to change the default tolerance for uni-directional eNOEs, default is errUni=20. The parameter errMeth is set to change the default tolerance for methyl eNOEs, default is errMeth=8.5. The parameter errMethyleneQ is set to change the default tolerance for methylene pseudo eNOEs, default is errMethyleneQ=5. The parameter errAro is set to change the default tolerance for aromatic eNOEs normalized to a non-aromatic spin, default is errAro=11. The parameter chiN is set to select a fresh hold for goodness of fit for output of restraints (experimental fit not corrected for spin diffusion). The parameter chiNc is set to select a fresh hold for goodness of fit for output of restraints (experimental fit corrected for spin diffusion).