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- AUTOPSY
- Aco type
- Alias
- Anam
- Anamlib
- Angle
- Anglelong
- Angles delete
- Angles select
- Angles set
- Anneal
- Ask
- Atom
- Atomlong
- Atoms attach
- Atoms list
- Atoms select
- Atoms set
- Atoms stereo
- Atoms swap
- Automated NMR protein structure calculation with CYANA
- BMRB chemical shift list file
- Bondangle
- Break
- Break, exit, quit, return
- CANDID
- CYANA Command: angles fix
- CYANA Command: angles free
- CYANA Command: anneal
- CYANA Command: atoms attach
- CYANA Command: atoms shifts
- CYANA Command: distances expand
- CYANA Command: distances make
- CYANA Command: distances stereoexpand
- CYANA Command: gradient
- CYANA Command: grid swap
- CYANA Command: library mirror
- CYANA Command: library new
- CYANA Command: library remove
- CYANA Command: library rename
- CYANA Command: molecules define
- CYANA Command: pcs axial
- CYANA Command: pcs make
- CYANA Command: pcs rhombic
- CYANA Command: peaks backcal
- CYANA Command: peaks calibrate
- CYANA Command: peaks count
- CYANA Command: peaks create
- CYANA Command: peaks delete
- CYANA Command: peaks deviations